Cited articles

Wolf SA. et al. SCORE: Smart Consensus Of RNA Expression — a consensus tool for detecting differentially expressed genes in bacteria. Bioinformatics, 2020
Simonson L. et al. Keratin 13 deficiency causes white sponge nevus in mice. Developmental Biology, 2020
Hozain AE. et al. Xenogeneic cross-circulation for extracorporeal recovery of injured human lungs. Nature Medicine, 2020
Fabbri L. et al. Identification of a new aggressive axis driven by ciliogenesis and absence of VDAC1-ΔC in clear cell Renal Cell Carcinoma patients. Theranostics, 2020
Cheng Q. et al. Senescence-associated genes and non-coding RNAs function in pancreatic cancer progression. RNA Biology, 2020
Cheng Q. et al. Generalizability of “GWAS hits” in clinical populations: Lessons from childhood cancer survivors. bioRxiv, 2020
Meyer DH. et al. A transcriptome based aging clock near the theoretical limit of accuracy. bioRxiv, 2020
Subhash S. et al. Transcriptome-wide Profiling of Cerebral Cavernous Malformations Patients Reveal Important Long noncoding RNA molecular signatures. Scientific Reports, 2019
Munir M. et al. Genome-Wide Classification of Type I, Type II and Type III Interferon-Stimulated Genes in Chicken Fibroblasts. bioRxiv, 2019
Allen TA. et al. Circulating tumor cells exit circulation while maintaining multicellularity augmenting metastatic potential. Journal of Cell Science, 2019
Zhao S. et al. Detailed modeling of positive selection improves detection of cancer driver genes. Nature communications, 2019
Narykov O. et al. DISPOT: A simple knowledge-based protein domain interaction statistical potential. Bioinformatics, 2019
Platzer A. et al. Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns. PLOSONE, 2019
Onyema OO. et al. Eosinophils downregulate lung alloimmunity by decreasing TCR signal transduction. Journal of Clinical Investigation, 2019
Ulke HM. et al. The oncogene ECT2 contributes to a hyperplastic, proliferative lung epithelial cell phenotype in IPF. American Journal of Respiratory Cell and Molecular Biology, 2019
Fu B. et al. Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate. BMC Genomics, 2019
Sukonina V. et al. FOXK1 and FOXK2 regulate aerobic glycolysis. Nature, 2019
Brian H. et al. Comparative Analysis of Normalization Methods for Network Propagation. Front. Genet., 2019
Wernig-Zorc S. et al. Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia. Epigenetics & Chromatin, 2019
Subhash S & Mishra K. et al. H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units. Nucleic Acids Research, 2018
Choy CT. et al. Embedding of Genes Using Cancer Gene Expression Data: Biological Relevance and Potential Application on Biomarker Discovery. Front Genet., 2018
Zhao S. et al. Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases. bioRxiv, 2018
James AR. et al. Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia. bioRxiv 2018
Morton MC. et al. Neonatal subventricular zone neural stem cells release extracellular vesicles that Act as a microglial morphogen. Cell Reports 2018
Mondal T. et.al. Sense-antisense lncRNA pair encoded by locus 6p22.3 determines neuroblastoma susceptibility via USP36-CHD7-SOX9 gene regulatory axis. Cancer cell 2018
Ali MM. et.al. PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers. Nature communications 2018
Singh A. et.al. TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer. bioRxiv 2018
Nguyen Hal X. et.al. Systemic neutrophil depletion modulates the migration and fate of transplanted human neural stem cells to rescue functional repair. Journal of Neuroscience 2017
Hoang Van L.T. et.al. RNA-seq reveals more consistent reference genes for gene expression studies in human non-melanoma skin cancers. PeerJ 2017
Subhash S. et.al. Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL. Clinical epigenetics 2016
Von der Heide E.K. et.al. Molecular alterations in bone marrow mesenchymal stromal cells derived from acute myeloid leukemia patients. Leukemia 2016
Mondal T. et.al. MEG3 long noncoding RNA regulates TGF-β pathway genes through formation of RNA-DNA triplex structures. Nature communications 2015
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{Gene Set Clustering based on Functional annotation}

Cited articles

Wolf SA. et al. SCORE: Smart Consensus Of RNA Expression — a consensus tool for detecting differentially expressed genes in bacteria.

Simonson L. et al. Keratin 13 deficiency causes white sponge nevus in mice.

Hozain AE. et al. Xenogeneic cross-circulation for extracorporeal recovery of injured human lungs.

Fabbri L. et al. Identification of a new aggressive axis driven by ciliogenesis and absence of VDAC1-ΔC in clear cell Renal Cell Carcinoma patients.

Cheng Q. et al. Senescence-associated genes and non-coding RNAs function in pancreatic cancer progression.

Cheng Q. et al. Generalizability of “GWAS hits” in clinical populations: Lessons from childhood cancer survivors.

Meyer DH. et al. A transcriptome based aging clock near the theoretical limit of accuracy.

Subhash S. et al. Transcriptome-wide Profiling of Cerebral Cavernous Malformations Patients Reveal Important Long noncoding RNA molecular signatures.

Munir M. et al. Genome-Wide Classification of Type I, Type II and Type III Interferon-Stimulated Genes in Chicken Fibroblasts.

Allen TA. et al. Circulating tumor cells exit circulation while maintaining multicellularity augmenting metastatic potential.

Zhao S. et al. Detailed modeling of positive selection improves detection of cancer driver genes.

Narykov O. et al. DISPOT: A simple knowledge-based protein domain interaction statistical potential.

Platzer A. et al. Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns.

Onyema OO. et al. Eosinophils downregulate lung alloimmunity by decreasing TCR signal transduction.

Ulke HM. et al. The oncogene ECT2 contributes to a hyperplastic, proliferative lung epithelial cell phenotype in IPF.

Fu B. et al. Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate.

Sukonina V. et al. FOXK1 and FOXK2 regulate aerobic glycolysis.

Brian H. et al. Comparative Analysis of Normalization Methods for Network Propagation.

Wernig-Zorc S. et al. Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia.

Subhash S & Mishra K. et al. H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units.

Choy CT. et al. Embedding of Genes Using Cancer Gene Expression Data: Biological Relevance and Potential Application on Biomarker Discovery.

Zhao S. et al. Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases.

James AR. et al. Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia.

Morton MC. et al. Neonatal subventricular zone neural stem cells release extracellular vesicles that Act as a microglial morphogen.

Mondal T. et.al. Sense-antisense lncRNA pair encoded by locus 6p22.3 determines neuroblastoma susceptibility via USP36-CHD7-SOX9 gene regulatory axis.

Ali MM. et.al. PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers.

Singh A. et.al. TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer.

Nguyen Hal X. et.al. Systemic neutrophil depletion modulates the migration and fate of transplanted human neural stem cells to rescue functional repair.

Hoang Van L.T. et.al. RNA-seq reveals more consistent reference genes for gene expression studies in human non-melanoma skin cancers.

Subhash S. et.al. Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL.

Von der Heide E.K. et.al. Molecular alterations in bone marrow mesenchymal stromal cells derived from acute myeloid leukemia patients.

Mondal T. et.al. MEG3 long noncoding RNA regulates TGF-β pathway genes through formation of RNA-DNA triplex structures.

--GeneSCF publication

Subhash S et.al. GeneSCF: a real-time based functional enrichment tool with support for multiple organisms.